Lab Resources

  1. Home
  2. Resources

Lab Tools

  • Lopatkin Lab GitHub Home
  • Biosuite: A collection of bioinformatics wrappers for Matlab
  • PlasAnn: Plasmid Annotation Pipeline
  • Microbial Genomics course labs
  • Matlab for Scientists course content
  • HGT/AMR Association Pipeline
  • Google Scholar scraping bot

    • Useful Bioinformatic Tools

  • Bioconda: A hub for bioinformatic Conda packages
  • Biopython: The definitive python package for bioinformatic analysis
  • Biostars: Stack Overflow for Bioinformatics

    • Other Useful Resources

  • HarvardX Biomedical Data Science Open Online Training
  • Computational Genomics with R
  • Computational Genomics Manual
  • The Biostar Handbook
  • Applied Computational Genomics